Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LUSC rs12469534 chr2:38912029 G/A 2.33E-15 488 22.8 18.3 0.3 KM Plot
LUSC rs12760977 chr1:240128317 A/G 8.03E-12 492 21.5 26.77 2.02 KM Plot
LUSC rs13006376 chr2:38914251 A/C 2.55E-15 486 22.8 18.3 0.3 KM Plot
LUSC rs146570768 chr2:22908389 C/T 0 489 22.3 21.03 0.28 KM Plot
LUSC rs1641463 chr2:65782300 G/A 2.31E-6 492 4.5 20.53 22.23 KM Plot
LUSC rs16913811 chr9:111861345 C/T 3.65E-6 493 6.75 26.08 21.37 KM Plot
LUSC rs17070924 chr5:168593477 C/G 0 493 21.73 25.63 0.2 KM Plot
LUSC rs17110348 chr10:90006507 C/T 1.59E-7 493 0.65 20.28 22.3 KM Plot
LUSC rs2355918 chr16:20501023 G/T 3.04E-10 493 22.6 21.33 2.03 KM Plot
LUSC rs2396162 chr7:109476975 A/G 3.95E-9 493 3.63 23.33 22.2 KM Plot
LUSC rs34558770 chr2:38933040 C/T 4.0E-15 481 22.8 17.97 0.3 KM Plot
LUSC rs35585199 chr2:38923722 C/T 4.77E-15 479 22.9 17.97 0.3 KM Plot
LUSC rs35633433 chr1:240127935 T/C 8.41E-12 493 21.5 26.97 2.02 KM Plot
LUSC rs35749165 chr1:240128286 G/A 8.03E-12 492 21.5 26.77 2.02 KM Plot
LUSC rs35771436 chr1:240125909 G/C 8.41E-12 493 21.5 26.97 2.02 KM Plot